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Vast Scientific - Boundless Informatics Solutions for Science
select publications, presentations, and posters

 

 

 

 

Evaluation of label-free quantitative proteomics in a plant matrix: A case study of the night-to-day transition in corn leaf

Leah S. Riter, Pamela K. Jensen, Joan M. Ballam, Ewa Urbanczyk-Wochniak, Timothy Clough, Olga Vitek, Jennifer Sutton, Michael Athanas, Mary F. Lopez and Susan MacIsaac

Anal. Methods, 2012, Advance Article

 

 

Disulfide mapping validation using label-free differential analysis

Michael Athanas1, S Peterman2, D Sarracino2, B Krastins2, A Prakash2, T Rezai2, M F Lopez2

1VAST Scientific; 2Thermo Fisher Scientific BRIMS Center, ;
Novato, CA

ASMS 2011

 

 

Disulfide mapping validation using label-free differential analysis

Michael Athanas1, S Peterman2, D Sarracino2, B Krastins2, A Prakash2, T Rezai2, M F Lopez2

1VAST Scientific; 2Thermo Fisher Scientific BRIMS Center, ;
Novato, CA

MSACL 2011 Conference Poster

 

 

Detection of Age-Related PTMs as m/z Pair Tags in LC-MS Measurement of Mesenchymal Stem Cell Lysates using a Two-Pass Sample Acquistion

Michael Athanas1, D Sarracino2, B Krastins2, A Prakash2, T Rezai2, J Sutton2, V Lunyak3, M Dobke3, M F Lopez2

1VAST Scientific; 2Thermo Fisher Scientific BRIMS Center, ; 3Buck Institute for Age Research,
Novato, CA

MSACL 2011 Conference Poster

 

 

Detection of Age-Related PTMs as m/z Pair Tags in LC-MS Measurement of Mesenchymal Stem Cell Lysates

Michael Athanas1, D Sarracino2, B Krastins2, A Prakash2, T Rezai2, J Sutton2, V Lunyak3, M Dobke3, M F Lopez2

1VAST Scientific; 2Thermo Fisher Scientific BRIMS Center, ; 3Buck Institute for Age Research,
Novato, CA

HUPO 2010 Conference Poster

 

 

Discovery of Neurovascular Mediators in PFO-Related Stroke Using a Two-Pass
Label-Free Workflow

Michael Athanas1; David Sarracino2; Taha Rezai2; Amol Prakash2; Jennifer Sutton2; Bryan Krastins2; Mingming Ning3; Mary F Lopez2

1VAST Scientific;
3ThermoFisher Scientific, BRIMS, ;
3Mass General Hospital / Harvard Medical School, Boston, MA

HUPO 2010 Conference Poster

 

 

Mass Spectrometric Discovery and Selective Reaction Monitoring (SRM) of Putative Protein Biomarker Candidates in First Trimester Trisomy 21 Maternal Serum

SIEVE+Pinpoint Workflow

 

Mary F Lopez*†, Ramesh Kuppusamy‡, David A Sarracino†, Amol Prakash†, Michael Athanas§, Bryan Krastins†, Taha Rezai†, Jennifer N Sutton†, Scott Peterman† and Kypros Nicolaides‡ ThermoFisher Scientific BRIMS, 790 Memorial Drive, ssachusetts 02139, VAST Scientific, 790 Memorial Drive, ssachusetts 02139, and Fetal Medicine Foundation, 137 Harley Street, London, United Kingdom W1G 6BG

Journal of Proteome Research; May 25, 2010 (Article) DOI: 10.1021/pr100153j


 

A two-pass informatics-driven label-free workflow for discovery of neurovascular mediators in pfo-related stroke

Michael Athanas1; David Sarracino2; Taha Rezai2; Amol Prakash2; Jennifer Sutton2; Bryan Krastins2; Mingming Ning3; Mary F Lopez2

1VAST Scientific;
3ThermoFisher Scientific, BRIMS, ;
3Mass General Hospital / Harvard Medical School, Boston, MA

ASMS 2010 Conference Poster

 

 

Discovery analysis of multiple protein marker panels: Optimizing sensitivity and selectivity

M. Athanas1, A, Prakash2, T. Rezai2, B. Krastins2, D. Sarracino2, Kypros Nicolaides3, Ramesh Kuppusamy3, Mary F. Lopez2
1VAST Scientific, USA, 2Thermo Fisher Scientific, BRIMS, , USA, 3Fetal Medicine Foundation, London, UK

1VAST Scientific; 2University of Washington, Seattle, WA; 3ThermoFisher Scientific, ; 4ThermoFisher Scientific, Somerset, NJ; 5Harvard University, Boston, MA

Mass Spectrometry Application to the Clinical Lab 2010 Conference Poster

 

 

Analysis of multiple protein marker panels: Optimizing sensitivity and selectivity

M. Athanas1, A, Prakash2, T. Rezai2, B. Krastins2, D. Sarracino2, Kypros Nicolaides3, Ramesh Kuppusamy3, Mary F. Lopez2
1VAST Scientific, USA, 2Thermo Fisher Scientific, BRIMS, , USA, 3Fetal Medicine Foundation, London, UK

1VAST Scientific; 2University of Washington, Seattle, WA; 3ThermoFisher Scientific, ; 4ThermoFisher Scientific, Somerset, NJ; 5Harvard University, Boston, MA

International HUPO 2009 Conference Poster



 

Label Free Differential Analysis: An Iterative Approach to Increased Coverage, Improved Statistics and Results

Michael Athanas1; Michael J. Maccoss2; Amol Prakash3; Lukas Kall2; Daniela Tomazela2; Brendan Maclean2; Taha Rezai3; Bryan Krastins3; David Sarracino3; Scott Peterman4; Alejandra Garces5; Sarah Fortune5; Mary F Lopez3

1VAST Scientific; 2University of Washington, Seattle, WA; 3ThermoFisher Scientific, ; 4ThermoFisher Scientific, Somerset, NJ; 5Harvard University, Boston, MA

ASMS 2009 Conference Poster

 

 

Performance characteristics of an FT MS-based workflow for label-free differential MS analysis of human plasma: standards, reproducibility, targeted feature investigation, and application to a model of controlled myocardial infarction

Jennifer Sutton, Dr. , Tori Richmond, Xu Shi, Michael Athanas, Celeste Ptak, Robert Gerszten, Leo Bonilla

PROTEOMICS - Clinical Applications
Volume 2 Issue 6, Pages 862 - 88
1

 

 

Application of label-free quantitative differential analysis for biomarker discovery in Tuberculosis mycobacterium

Michael Athanas1, Bryan Krastins2 , David Sarracino2 , Amol Prakash2,  Taha Rezai2, Mary F Lopez2, Alejandra Garces3, Sarah Fortuane3

1VAST Scientific ,2Thermo Fisher Scientific, ;  3 Harvard University, Boston, MA

HUPO 2009 Conference Poster

 

 

Quantitative, Top-Down Identification of Differentially Expressed, Endogenous Peptides in Human Serum: A Robust, Sensitive and Novel Discovery Workflow

David A. Sarracino, Bryan Krastins, Michael Athanas, Amol Prakash, Taha Rezai, Kypros Nicolaides and Mary F Lopez .

Poster: Human Proteome Organisation Conference - 2008

 

 

Development of a Novel Label-Free Differential Analysis Workflow for Protein Biomarker Discovery from Renal Cell Carcinoma Tissue Interstitial Fluid

J. N. Sutton, S. E. Abbatiello, B. L. Hood, M. Athanas, R. Dhir, M. Lopez, T. Conrads

Poster: Human Proteome Organisation Conference - 2007

 

 

Weak decays of Lambda Helium 4 Hypernuclei

J. D. Parker, M. J. Athanas, P. D. Barnes, S. Bart, B. Bassalleck, R. Chrien, G. Diebold, G. B. Franklin, K. Johnston, P. Pile, B. Quinn, F. Rozon, R. Sawafta, R. A. Schumacher, R. Stearns, I. Sukaton, R. Sutter, J. J. Szymanski and V. J. Zeps

arXiv:0705.3311 (May 2007)

 

 

 

 

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